Bacterial Ring Rot of Potato - Some Key Questions

 
 
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 What causes ring rot? | Where did the infection come from? | How does one get rid of ring rot? | What to expect from ring rot testing? | The lab tests

What Causes Ring Rot?

Ring rot is caused by a bacterium:

  • its properties differ significantly from fungi and viruses.
  • many fungi can be controlled by chemical sprays, bacteria generally cannot.
  • many viruses can be controlled by controlling their vectors, bacteria cannot.
Bacteria are very small:
  • A great many ring rot bacterial cells are present in even a very small infection.
  • Ring rot bacteria can be spread about readily.
  • The extent that ring rot has spread by the time it is detected is difficult to know.
Ring rot bacteria as seen with a scanning electron microscope.

Bacteria are persistent:
  • Under the right conditions ring rot bacteria persist for many years.
  • Ring rot bacteria survive in infected potato plant and tuber tissue - wherever they may be.
  • Ring rot bacteria survive particularly well under dry or cold conditions.

Ring rot bacteria as seen with a scanning
electron microscope

Where Did the Infection Come From?

There are two possible sources:
  • It came from an off-farm source.
  • It persists at a low level on the farm site.
Off-farm sources of ring rot:
  • Infected seed potatoes bought from another farm.
  • Infected culls brought on-site as cattle feed.
  • Un-cleaned commercial trucks or other contaminated equipment brought on farm.
  • By man or animals from neighbouring, infected tablestock or processing crops.
Persistence on farm site:
  • Insufficient clean-up after ring rot occurrence - gradually builds up again - spread by equipment.
  • Maintenance of a low level of infection (latent) on farm - short generation time - flush through but back infection - spread by equipment.
How Does One Get Rid of Ring Rot?

Getting rid of ring rot:
  • TOTAL clean up.
  • Remove ALL potatoes from operation.
  • "Flush-through system" do not keep seed on farm for several years subsequent to BRR.
  • Clean all potentially contaminated surfaces.
  • Disinfect completely all cleaned surfaces.
  • Get rid of, or sterilize, all potentially contaminated disposables eg. gloves, knives, overalls, etc.
Finding ring rot on a farm:
  • Visual inspection - limited sensitivity due to latent infections, success varies with variety and growing conditions.
  • Lab tests - better sensitivity than visual, but still limited sensitivity due to sample size and test factors.
Underlying assumption in determining probability of detection:
  • Ring rot is randomly distributed in a lot; each plant is equally likely to be infected.
  • Is the assumption more true for small lots than it is for big lots ?????
Some reasons for non-randomness of ring rot:
  • One lot planted with seed from different sources.
  • Different equipment was used for harvesting, planting, etc. of a portion of the lot
  • Seed stored in different places.
  • One lot planted in different fields.
  • Seed lot grown adjacent to non-seed field.
  • Low incidence of BRR, seed cutters inoculates adjacent seed -NOT RANDOM.
What to Expect from Ring Rot Testing

Greatest limitation is sample size:

Sample size
Disease incidence
Probability of detection
400
0.1%
33%
1000
0.1%
63%
2000
0.1%
86%
5000
0.1%
99%

What can testing do?
  • Testing CANNOT prove that a potato lot is free from ring rot.
  • Testing is an extension of visual inspection.
  • Testing sensitivity is limited by sample size and the laboratory test.
  • Positive test result indicates, with a high level of certainty, that ring rot is present.
  • Negative test result indicates that the level of infection is below detection level.


The Lab Tests
  • ELISA - tests for presence of slime produced by the bacteria.
  • IMF - tests for the presence of cells of the ring rot bacterium.
  • PCR - tests for the presence of DNA of the ring rot bacterium.
ELISA Test
  • Excellent screening test.
  • Subject to false positives.
  • Sensitivity limited by testing in composite samples.
ELISA test
.
IMF
  • Eliminates false positives of ELISA and confirms true positives.
  • Discerns typical bacterium cell structure.
  • Indicates level of infection in the plant or tuber.
IMF
.
PCR
  • Extremely sensitive.
  • Risk of contaminating sample from infected neighbouring lot.
  • It’s a tricky test prone to test problems.
  • Costly do do.
  • Patent-protected method.
PCR
.
Sensitivity of lab tests:
  • Sensitivity is decreased by testing in composites.
  • Sensitivity is decreased by using a positive/negative threshold to avoid false positive results.
  • In addition to the nature of the test, sensitivity is affected by sample concentration, dilution, and volume of sample extract actual used in the test.
CFIA Testing Strategy

Positive test result:

  • Err on the side of caution.
  • A positive is only called when there is no doubt.
  • This approach prevents a false BRR diagnosis.
  • This approach favors the seller over the buyer.
  • Negative test result:
  • Can never be certain that there is no BRR infection below test sensitivity or outside of sampled units.

Solke H. De Boer
CFIA - Lab Directorate
 
 
 
 
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For more information about the content of this document, contact Robert Spencer.
This information published to the web on December 3, 2003.
Last Reviewed/Revised on December 10, 2012.